Vaccine shortages and surging cases:

Everyday struggle: A motorcyclist passes a COVID-19 awareness campaign message in Kampala, Uganda PIC: TNH
Everyday struggle: A motorcyclist passes a COVID-19 awareness campaign message in Kampala, Uganda PIC: TNH

A “third wave” of COVID-19 cases is filling hospital beds, exhausting oxygen stocks, and testing already overloaded health staff in the hardest-hit African countries.

Continent-wide, recorded infections are at over six million, with more than 153,000 official deaths. The highly transmissible Delta variant is now prevalent in 16 countries, and is surging through unvaccinated populations.

“The worst is yet to come,” Matshidiso Moeti, the World Health Organisation’s (WHO) regional director for Africa, has warned. “The end to this precipitous rise is still weeks away.”

The continent’s vaccine roll-out is crawling, slowed in part by a critical shortage of doses. Countries are reliant on bilateral deals and the UN-backed COVAX facility, which aims to distribute vaccines equitably. But vaccine deliveries have not come close to matching needs, and almost ground to a halt in May and early June, according to the WHO.


As a result, less than two percent of Africans are fully vaccinated, and the 50 million jabs administered so far account for just 1.6 percent of the global total.

“Vaccine nationalism” – the hoarding of stock by Western governments – is part of the problem. But there have also been failings in the vaccine strategy of individual African countries – despite their proven ability to respond to other health emergencies, including HIV.

The ‘third wave’ by the numbers

The vaccine supply shortages could have been anticipated, roll-outs could have been better managed, and the vaccine hesitancy emerging in several countries more effectively countered.

Instead, public health messages have struggled to ease public concerns, much of it fuelled by viral conspiracy-minded social media. Allegations of corruption, which have toppled at least one health minister, have further undermined public confidence in government responses.

COVID-19 is more than a health crisis. The lack of vaccines has left governments with few options other than painful lockdowns to try to slow the spread, deepening hardships. In South Africa, the worst-hit country on the continent, the draconian measures have seen a surge in job losses, with nearly half of South Africans now reporting they go to bed hungry.

The following takes the COVID-19 temperature in six countries. The snapshot ranges from vaccine-sceptical Burundi, to Uganda, where the government is struggling to get a grip on the fast-spreading Delta variant. Data on cases, deaths, and vaccinations, is sourced from Our World in Data.

Burundi: ‘Let health professionals get vaccinated’

COVID cases: 5,706

Deaths: 8

Vaccinations: n/a

Percentage of population vaccinated: n/a

As some countries scramble to replenish their vaccine stocks, Burundi has taken a different path: opting out of the COVAX programme and holding back on approving vaccines, which the government says were produced in a hurry and are potentially unsafe.

Though more than 121 COVID-19 cases were recorded on a single day last month – the second highest recorded – the government maintains there is no cause for alarm and has eased quarantine and border restrictions in recent weeks.

Burundi took a lackadaisical approach when the pandemic first struck. Pre-election rallies drew thousands into jam-packed stadiums and WHO officials were declared personae non gratae. Things changed when a new president came to power following the sudden death of Pierre Nkurunziza to what many suspect was COVID-19: Mask wearing was made compulsory on public transport and night clubs and karaoke bars were closed.

In interviews with The New Humanitarian, frontline health workers expressed frustration in the government’s vaccination stance. One doctor at a private clinic said he travelled to a neighbouring country to get a vaccine that would enable him to work safely.

The doctor – who contracted COVID-19 last year – said he hoped the government would follow the lead of Tanzania, which has asked to join COVAX amid a pandemic policy shift following the March death of coronavirus-skeptic former president, John Magufuli.

“This is a big step because it will serve as a lesson for our government,” said the doctor, who asked not to be named. “I would advise the Burundian government to let health professionals get vaccinated. It would make them more stable and secure.”

Bujumbura paramedic Jean Marie, who did not want his surname published, said he would “feel safer” if vaccines were offered to health workers, while a nurse aide of 20 years who wanted to remain anonymous said they felt “insecure at work”.

Bus driver Adbul Karim was less fussed about getting jabbed: “If I try to see the situation, I don’t see the importance of the vaccine,” he said. “Countries that have vaccinated almost all of their populations continue to be confined [so] my question is “how important is the coronavirus vaccine when even the vaccinated are under lockdown?”

Cameroon: ‘A vaccine takes many years of trial and error for it to be tested and approved’

COVID cases: 80,858

Deaths: 1,324

Vaccinations: 163,921

Population vaccinated: 0.11 percent (fully), 0.40 percent (partly)

Be it AstraZeneca or Sinopharm, Cameroonians seem doubtful over the efficacy of the vaccines being offered by the government. Less than 10% of the more than 800,000 people targeted for the first phase of vaccinations have been jabbed since the launch of the campaign in April. A parliamentarian has gone so far as to suggest vaccines should be sneaked into bottled water to overcome the hesitancy.

That hasn’t done much good for public confidence – even amongst some doctors. One general practitioner, who asked for anonymity, said his concern was the speed of vaccine development: “A vaccine takes many years of trial and error for it to be tested and approved for use.”

The only reason Festus (he didn’t want to give his full name) said he consented to being jabbed last month was because the organisation he worked for as a driver threatened to sack those who refused. With just a few years to go before retirement, “I had no choice”, he said.

The government’s public awareness campaign has failed to address concerns and debunk the mushrooming conspiracy theories. Public cynicism has also deepened over reports of official corruption. Half the Cabinet – 15 ministers, including health boss Manaouda Malachi – are being investigated over the disappearance of most of a $335 million loan from the International Monetary Fund to support the anti-COVID fight.

Mali: Third wave passes

COVID cases: 14,486

Deaths: 528

Vaccinations: 196,862

Population vaccinated: 0.26 percent (fully), 0.46 percent (partly)

Mali has already passed the peak of its third wave, which saw more cases than the previous two, Akory Ag Iknan, the director of the country’s National Institute of Public Health, told The New Humanitarian. Daily cases reached more than 400 in early April but have since tailed off.

More than 190,000 people have, meanwhile, received their first vaccine dose after a COVAX shipment in March.

The roll-out is focused on the capital city, Bamako, but Iknan said some supplies have been made available in northern and central parts of the country, where jihadist groups and communal militias are active.

Negative publicity and mixed messages about the vaccines have hindered the roll-out. Amid low uptake, some 100,000 doses were donated ahead of expiration to neighbouring Côte d’Ivoire, though a new COVAX batch is expected to arrive in August.

At a bustling Bamako school visited by The New Humanitarian last week just two out of 200 teachers had opted to take the vaccine, according to the school’s director, Mahamadou Assalia. And at a nearby vaccination site within a community health centre, expatriate workers were the main group receiving jabs on a recent afternoon.

Nigeria: Virus fatigue, vaccine disinformation

COVID cases: 168,867

Deaths: 2,125

Vaccinations: 3,938,945

Population vaccinated: 0.68 percent (fully), 0.55 percent (partly)

For many Nigerians, COVID-19 exhaustion is beginning to set in. While banks, airports, and a few malls still insist on face masks, they’ve been discarded at markets and on public transport on the assumption (or at least the hope) that the coronavirus is in retreat.

Part of the issue is numbers. With a population of 200 million, the official infection rate seems

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